MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-148-P3

Family name MIR-148 (all species)
Seed CAGUGCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-152
Paralogues Tni-Mir-148-P2 
Orthologues Ami-Mir-148-P3  Bta-Mir-148-P3  Cfa-Mir-148-P3  Cja-Mir-148-P3  Cmi-Mir-148-P3  Cpi-Mir-148-P3  Cpo-Mir-148-P3  Dno-Mir-148-P3  Dre-Mir-148-P3  Ebu-Mir-148  Eca-Mir-148-P3  Gmo-Mir-148-P3  Hsa-Mir-148-P3  Laf-Mir-148-P3  Loc-Mir-148-P3  Mal-Mir-148-P3  Mdo-Mir-148-P3  Mml-Mir-148-P3  Mmr-Mir-148-P3  Mmu-Mir-148-P3  Neu-Mir-148-P3  Oan-Mir-148-P3  Ocu-Mir-148-P3  Pab-Mir-148-P3  Rno-Mir-148-P3  Sha-Mir-148-P3  Spt-Mir-148-P3  Sto-Mir-148-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 5385294-5385354 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAUCCAGACGCUGCUCAAACUCUGGGCUAAGUUCUGUGAUACACUCUGACUGUGAAUGGCUAUGCUAGUCAGUGCAUAACAGAACUUUGUCCCGGGUCUGAAUCCUCCUCCUCGGUUCU
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Structure
        10          20        30        40        50        60 
UCCAUCCAGACGCUGCU--| A    U    U         G  A    CU    GUGAAUG 
                   CA ACUC GGGC AAGUUCUGU AU CACU  GACU       \
                   GU UGGG CCUG UUCAAGACA UA GUGA  CUGA       G
UCUUGGCUCCUCCUCCUAA^ C    C    U         A  C    --    UCGUAUC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-148-P3_5p*
mirBase accessionNone
Sequence 
0- AAGUUCUGUGAUACACUCUGACU -23
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Mature sequence

Tni-Mir-148-P3_3p
mirBase accessionMIMAT0003104
Sequence 
40- UCAGUGCAUAACAGAACUUUG -61
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