MirGeneDB ID | Eca-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
Eca-Mir-148-P1
Eca-Mir-148-P4
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Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
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Node of Origin (family) |
Vertebrata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009158.1: 24247096-24247154 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GGAGGCUUGGCGCCGCUGUCCCCCCGGCCCAGGUUCUGUGAUACACUCUGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGACGGACCUUCUGCACCCAAUGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGGCUUGGCGCCGCU- C-| C G A CU CGGGCU
GUCC CC GGCCCAGGUUCUGU AU CACU GACU \
CAGG GG CCGGGUUCAAGACA UA GUGA CUGA C
CGGGUAACCCACGUCUUC CA^ C G C -- CGAGGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-148-P3_5p* |
mirBase accession | None |
Sequence |
0- AGGUUCUGUGAUACACUCUGACU -23
Get sequence
|
Mature sequence |
Eca-Mir-148-P3_3p |
mirBase accession | None |
Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|