MirGeneDB ID | Eca-Mir-148-P4 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-148b
|
Paralogues |
Eca-Mir-148-P1
Eca-Mir-148-P3
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Orthologues |
Aca-Mir-148-P4
Ami-Mir-148-P4
Bta-Mir-148-P4
Cfa-Mir-148-P4
Cja-Mir-148-P4
Cli-Mir-148-P4
Cmi-Mir-148-P4
Cpi-Mir-148-P4
Cpo-Mir-148-P4
Dno-Mir-148-P4
Ebu-Mir-148
Ete-Mir-148-P4
Gga-Mir-148-P4
Gja-Mir-148-P4
Hsa-Mir-148-P4
Laf-Mir-148-P4
Lch-Mir-148-P4
Loc-Mir-148-P4
Mml-Mir-148-P4
Mmr-Mir-148-P4
Mmu-Mir-148-P4
Mun-Mir-148-P4
Neu-Mir-148-P4
Ocu-Mir-148-P4
Pab-Mir-148-P4
Pbv-Mir-148-P4
Rno-Mir-148-P4
Sha-Mir-148-P4
Spt-Mir-148-P4
Tgu-Mir-148-P4
Xla-Mir-148-P4a
Xla-Mir-148-P4b
Xtr-Mir-148-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009153.1: 72050093-72050153 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAUUUCCAGGCACAAUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCCAUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAUUUCCAGGCACAAUU--| A UG U A CA GUGGCU
AGC UUUGAGG AAGUUCUGU AU CACU GGCU \
UCG AAGCUCU UUCAAGACA UA GUGA CUGA C
GUUUACCCAUCGACGAUCUU^ A GU C C -- AAGUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-148-P4_5p* |
mirBase accession | MIMAT0012971 |
Sequence |
0- GAAGUUCUGUUAUACACUCAGGCU -24
Get sequence
|
Mature sequence |
Eca-Mir-148-P4_3p |
mirBase accession | MIMAT0012972 |
Sequence |
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
|