MirGeneDB ID | Laf-Mir-148-P4 |
---|---|
Family name | MIR-148 (all species) |
Seed | CAGUGCA |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-148-P1 Laf-Mir-148-P3 |
Orthologues | Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010029.1: 40733307-40733367 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCAUUUCCAGGCACUGUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUGUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCCGUUUGGet precursor sequence |
Structure | 10 20 30 40 50 60 UCAUUUCCAGGCACUGUU--| A UG U A CA GUGGCU AGC UUUGAGG AAGUUCUGU AU CACU GGCU \ UCG AAGCUCU UUCAAGACA UA GUGA CUGA C GUUUGCCCAUCGACGAUCUU^ A GU C C -- AAGUGU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Laf-Mir-148-P4_5p* |
mirBase accession | None |
Sequence |
0- GAAGUUCUGUUAUACACUCAGGCU -24
Get sequence
|
Mature sequence | Laf-Mir-148-P4_3p |
mirBase accession | None |
Sequence |
39- UCAGUGCAUCACAGAACUUUGU -61
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|