MirGeneDB ID | Laf-Mir-148-P4 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-148-P1
Laf-Mir-148-P3
|
Orthologues |
Aca-Mir-148-P4
Ami-Mir-148-P4
Bta-Mir-148-P4
Cfa-Mir-148-P4
Cja-Mir-148-P4
Cli-Mir-148-P4
Cmi-Mir-148-P4
Cpi-Mir-148-P4
Cpo-Mir-148-P4
Dno-Mir-148-P4
Ebu-Mir-148
Eca-Mir-148-P4
Ete-Mir-148-P4
Gga-Mir-148-P4
Gja-Mir-148-P4
Hsa-Mir-148-P4
Lch-Mir-148-P4
Loc-Mir-148-P4
Mml-Mir-148-P4
Mmr-Mir-148-P4
Mmu-Mir-148-P4
Mun-Mir-148-P4
Neu-Mir-148-P4
Ocu-Mir-148-P4
Pab-Mir-148-P4
Pbv-Mir-148-P4
Rno-Mir-148-P4
Sha-Mir-148-P4
Spt-Mir-148-P4
Tgu-Mir-148-P4
Xla-Mir-148-P4a
Xla-Mir-148-P4b
Xtr-Mir-148-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010029.1: 40733307-40733367 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAUUUCCAGGCACUGUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUGUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCCGUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAUUUCCAGGCACUGUU--| A UG U A CA GUGGCU
AGC UUUGAGG AAGUUCUGU AU CACU GGCU \
UCG AAGCUCU UUCAAGACA UA GUGA CUGA C
GUUUGCCCAUCGACGAUCUU^ A GU C C -- AAGUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Laf-Mir-148-P4_5p* |
mirBase accession | None |
Sequence |
0- GAAGUUCUGUUAUACACUCAGGCU -24
Get sequence
|
Mature sequence |
Laf-Mir-148-P4_3p |
mirBase accession | None |
Sequence |
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
|