| MirGeneDB ID | Spt-Mir-148-P4 |
|---|---|
| Family name | MIR-148 (all species) |
| Seed | CAGUGCA |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-148-P1 Spt-Mir-148-P3 |
| Orthologues | Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003896.1: 758174-758234 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCGCAGUGGAGCCGCUGCAGCGUUUGAGGUGGAGUUCUGUUGUACACUCAGACUGUGGCUAUGGGAAGGUCAGUGCAUCACAGAACUUUGUCUCGAGAGCUUUCCAGCAUCCAGAAGGGGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCGCAGUGGAGCCGCUGC--| G UG U A CA GUGGCU AGC UUUGAGG GAGUUCUGU GU CACU GACU \ UCG GAGCUCU UUCAAGACA UA GUGA CUGG A GGGGGAAGACCUACGACCUU^ A GU C C -- AAGGGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Spt-Mir-148-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGAGUUCUGUUGUACACUCAGACU -24
Get sequence
|
| Mature sequence | Spt-Mir-148-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
|
