| MirGeneDB ID | Cja-Mir-148-P4 |
|---|---|
| Family name | MIR-148 (all species) |
| Seed | CAGUGCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-148-P1 Cja-Mir-148-P3 |
| Orthologues | Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021923.1: 61648679-61648739 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCAUUUCCAAGCACUAUUAGCAUUUGAGGUGAAGUUCUGUUUUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCUAUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCAUUUCCAAGCACUAUU--| A UG UUUA CA GUGGCU AGC UUUGAGG AAGUUCUGU CACU GGCU \ UCG AAGCUCU UUCAAGACA GUGA CUGA C UUUUAUCCAUCGACGAUCUU^ A GU CUAC -- AAGUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Cja-Mir-148-P4_5p* |
| mirBase accession | None |
| Sequence |
0- GAAGUUCUGUUUUACACUCAGGCU -24
Get sequence
|
| Mature sequence | Cja-Mir-148-P4_3p |
| mirBase accession | None |
| Sequence |
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
|
