MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-148-P4

Family name MIR-148 (all species)
Seed CAGUGCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-148-P1  Cja-Mir-148-P3 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Hsa-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021923.1: 61648679-61648739 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUUUCCAAGCACUAUUAGCAUUUGAGGUGAAGUUCUGUUUUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCUAUUUU
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Structure
        10          20        30        40        50        60 
UCAUUUCCAAGCACUAUU--|  A       UG         UUUA    CA    GUGGCU 
                    AGC UUUGAGG  AAGUUCUGU    CACU  GGCU      \
                    UCG AAGCUCU  UUCAAGACA    GUGA  CUGA      C
UUUUAUCCAUCGACGAUCUU^  A       GU         CUAC    --    AAGUCU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Cja-Mir-148-P4_5p*
mirBase accessionNone
Sequence 
0- GAAGUUCUGUUUUACACUCAGGCU -24
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Mature sequence

Cja-Mir-148-P4_3p
mirBase accessionNone
Sequence 
39- UCAGUGCAUCACAGAACUUUGU -61
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