MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-148-P3  Cja-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021922.1: 29445932-29445993 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAAGAGAGCACGUUUGGUCUUUUGAGGCAAAGUUCUGAGACACUCCGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUUUGGUCGCCGCUGCCGCGAG
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Structure
        10          20        30        40          50        60
GAGGAAGAGAGCACGUUU--       U              -  A-|   CC    CUGAGU 
                    GGUCUUU GAGGCAAAGUUCUG AG  CACU  GACU      A
                    UCGGAGA CUCUGUUUCAAGAC UC  GUGA  CUGA      U
GAGCGCCGUCGCCGCUGGUU       U              A  AC^   --    AGAUAG 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-148-P1_5p*
mirBase accessionNone
Sequence 
0- CAAAGUUCUGAGACACUCCGACU -23
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Mature sequence

Cja-Mir-148-P1_3p
mirBase accessionNone
Sequence 
39- UCAGUGCACUACAGAACUUUGUC -62
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