MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-148-P2  Loc-Mir-148-P3  Loc-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG11: 40856666-40856725 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGAUCUUUGCGAAUUUGUUUUUGAGAGCAAAGUUCUGUAACACGUAGACUCUGAGUACGGUAGAAGUCAGUGCACUACAGAACUUGGUUUUCAGAGACCAGUGGACACGCCGCGGCAG
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Structure
        10          20        30        40          50         
UUGGAUCUUUGCGAAUUU--            A          A--|  GUA    CUGAGU 
                    GUUUUUGAGAGC AAGUUCUGUA   CAC   GACU      A
                    CAGAGACUUUUG UUCAAGACAU   GUG   CUGA      C
GACGGCGCCGCACAGGUGAC            G          CAC^  A--    AGAUGG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-148-P1_5p*
mirBase accessionNone
Sequence 
0- AAAGUUCUGUAACACGUAGACU -22
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Mature sequence

Loc-Mir-148-P1_3p
mirBase accessionNone
Sequence 
38- UCAGUGCACUACAGAACUUGGU -60
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