Mir-148-P1

MirGeneDB ID

Pbv-Mir-148-P1

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-148a

Paralogues

Pbv-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953020.1: 321926-321987 [+]

Precursor
(pre-Mir +30nt flank)

AGUGGGGAAAGAAGUUUUGGUUUCUGGAAGCAAAGUUCUGUGACACUCGGACUCUGAUUAUAAUAGAAGUCAGUGCACUACAGAACUUUGUCUCCAGGGGCUGCAGCAGCCAAGGAGUUAAC

Get precursor sequence

Structure

        10          20        30        40          50        60
AGUGGGGAAAGAAGUUUU--   UU     AG            A--|   CG    CUGAUU 
                    GGU  CUGGA  CAAAGUUCUGUG   CACU  GACU      A
                    UCG  GACCU  GUUUCAAGACAU   GUGA  CUGA      U
CAAUUGAGGAACCGACGACG   GG     CU            CAC^   --    AGAUAA 
120       110       100        90        80          70