Mir-148-P1a

MirGeneDB ID

Xla-Mir-148-P1a

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-148a

Paralogues

Xla-Mir-148-P1b Xla-Mir-148-P4a Xla-Mir-148-P4b

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xtr-Mir-148-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030734.1: 38926039-38926098 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGGACUUGGCUUACUAGUCUUUUAAAUCAAAGUUCUGUGACACUUCGACUCUGAAUUUGAUAGCAGUCAGUGCACUACAGAACUUUGUUUUGGGAGUCUGCCGCUUCUUCCCCCCCCC

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Structure

        10          20        30        40          50         
CAUGGACUUGGCUUACU--  U        U            A--|   UC    CUGAAU 
                   AG CUUUUAAA CAAAGUUCUGUG   CACU  GACU      U
                   UC GAGGGUUU GUUUCAAGACAU   GUGA  CUGA      U
CCCCCCCCCUUCUUCGCCG  U        U            CAC^   --    CGAUAG 
.       110       100        90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-148-P1a_5p*

mirBase accession

MIMAT0046466

Sequence

0- AAAGUUCUGUGACACUUCGACU -22

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Mature sequence

Xla-Mir-148-P1a_3p

mirBase accession

MIMAT0046467

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

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