MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126711.1: 735576-735635 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACGUGAAAAGAGUUCAGUCUCUUAAGGCAAAGUUCUGUAUCACUUAGACUCUGAGUACUAUAGAAGUCAGUGCACUACAGAACUUUGUUUUGGGAGUCUACAUCCCAGUAAGAGGAGU
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Structure
        10          20        30        40          50         
CAACGUGAAAAGAGUUC--  U                     U--|   UA    CUGAGU 
                   AG CUCUUAAGGCAAAGUUCUGUA   CACU  GACU      A
                   UC GAGGGUUUUGUUUCAAGACAU   GUGA  CUGA      C
UGAGGAGAAUGACCCUACA  U                     CAC^   --    AGAUAU 
.       110       100        90        80          70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-148-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- AAAGUUCUGUAUCACUUAGACU -22
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Mature sequence

Lch-Mir-148-P1_3p (predicted)

mirBase accessionNone
Sequence
38- UCAGUGCACUACAGAACUUUGU -60
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