MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-148-o1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-152a
Paralogues Pma-Mir-148-o2 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046087.1: 12147458-12147519 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCCCCCUGGACACUGGCGCUCAGGGCGAGGUUCUGUCAUUCGCUCCGGACUCUUCUCGUUGCUUGCAGUCAGUGCAUGACAGAACUUGACCCUGGCUGCCCCGAGCAUGGCUUCUUACA
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Structure
        10          20         30        40        50        60  
CCCGCCCCCUGGACACU--   -| U     CG            U    CCG    CUUCUCG 
                   GGC GC CAGGG  AGGUUCUGUCAU CGCU   GACU       \
                   CCG CG GUCCC  UUCAAGACAGUA GUGA   CUGA       U
ACAUUCUUCGGUACGAGCC   U^ -     AG            C    ---    CGUUCGU 
120       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-148-o1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUCUGUCAUUCGCUCCGGACU -24
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Mature sequence

Pma-Mir-148-o1_3p
mirBase accessionMIMAT0019481
Sequence 
41- UCAGUGCAUGACAGAACUUGA -62
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