| MirGeneDB ID | Spt-Mir-148-P1 |
|---|---|
| Family name | MIR-148 (all species) |
| Seed | CAGUGCA |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-148-P3 Spt-Mir-148-P4 |
| Orthologues | Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011191.1: 1499548-1499607 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGAUGGAGGAGGACUUGGUCUCUUGAAGCAAAGUUCUGUGACACUCAGACUCUGAUUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUUCCUGGGGGCUACAGCAGCAGUGAAGAGGUGet precursor sequence |
| Structure | 10 20 30 40 50 GUGAUGGAGGAGGACUU-- UGA A--| CA CUGAUU GGUCUCU AGCAAAGUUCUGUG CACU GACU A UCGGGGG UUGUUUCAAGACAU GUGA CUGA U UGGAGAAGUGACGACGACA UCC CAC^ -- AGAUAG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Spt-Mir-148-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAAGUUCUGUGACACUCAGACU -22
Get sequence
|
| Mature sequence | Spt-Mir-148-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UCAGUGCACUACAGAACUUUGU -60
Get sequence
|
