MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-148-P3  Spt-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01011191.1: 1499548-1499607 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUGGAGGAGGACUUGGUCUCUUGAAGCAAAGUUCUGUGACACUCAGACUCUGAUUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUUCCUGGGGGCUACAGCAGCAGUGAAGAGGU
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Structure
        10          20        30        40          50         
GUGAUGGAGGAGGACUU--       UGA              A--|   CA    CUGAUU 
                   GGUCUCU   AGCAAAGUUCUGUG   CACU  GACU      A
                   UCGGGGG   UUGUUUCAAGACAU   GUGA  CUGA      U
UGGAGAAGUGACGACGACA       UCC              CAC^   --    AGAUAG 
.       110       100        90        80          70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Spt-Mir-148-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- AAAGUUCUGUGACACUCAGACU -22
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Mature sequence

Spt-Mir-148-P1_3p (predicted)

mirBase accessionNone
Sequence
38- UCAGUGCACUACAGAACUUUGU -60
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