MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015170898.1: 349164-349223 [-]
Precursor
(pre-Mir +30nt flank)
GGAAAAAAAGAAGAUUUGGUCUUUGGAAGCAAAGUUCUGUGACACUCAGACUCUGAUUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCCAGGGACUGCAGCAGCCAAGGAGUUAA
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Structure
        10          20        30        40          50         
GGAAAAAAAGAAGAUUU--          AG            A--|   CA    CUGAUU 
                   GGUCUUUGGA  CAAAGUUCUGUG   CACU  GACU      A
                   UCAGGGACCU  GUUUCAAGACAU   GUGA  CUGA      U
AAUUGAGGAACCGACGACG          CU            CAC^   --    AGAUAG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-148-P1_5p*
mirBase accessionNone
Sequence 
0- AAAGUUCUGUGACACUCAGACU -22
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Mature sequence

Gja-Mir-148-P1_3p
mirBase accessionNone
Sequence 
38- UCAGUGCACUACAGAACUUUGU -60
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