MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-148a
Paralogues Tgu-Mir-148-P1-as  Tgu-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 2: 33394964-33395023 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-148-P1)		 Mir-148-P1 2: 33394964-33395023 [-] UCSC Ensembl
Mir-148-P1-as 2: 33394966-33395025 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCGGCGGAGGACUGGAGCCUCCGGAAGCAAAGUUCUGUGACACUCCGACUCUGGGUACGAUAGCAGUCAGUGCACUACAGAACUUUGUCUCCGGCGGCGGCGGCGGCCCCGGAGCCUC
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Structure
        10          20        30        40          50         
UACCGGCGGAGGACUGGA--   U     AG            A--|   CC    CUGGGU 
                    GCC CCGGA  CAAAGUUCUGUG   CACU  GACU      A
                    CGG GGCCU  GUUUCAAGACAU   GUGA  CUGA      C
CUCCGAGGCCCCGGCGGCGG   C     CU            CAC^   --    CGAUAG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-148-P1_5p*
mirBase accessionMIMAT0026973
Sequence 
0- AAAGUUCUGUGACACUCCGACU -22
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Mature sequence

Tgu-Mir-148-P1_3p
mirBase accessionMIMAT0014503
Sequence 
38- UCAGUGCACUACAGAACUUUGU -60
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