MirGeneDB 2.1
MirGeneDB ID

Tgu-Mir-148-P4

Family name MIR-148 (all species)
Seed CAGUGCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-148-P1  Tgu-Mir-148-P1-as 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Hsa-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Ocu-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 29: 2800940-2800998 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGUUUGGCACGGUUUGGGUGCUCAGGCCGGGGUUCUGUCCUACACUGGGCUGUGGCUCUGGGCAGUCAGUGCAUCACAGAACUUGGUCCUGGGCACCCCCGGCACCGCAGGACCUGC
Get precursor sequence
Structure
        10          20         30        40        50         
ACAGUUUGGCACGGUUU--           -|    G      CCUA      G  GUGGC 
                   GGGUGCUCAGG CCGGG UUCUGU    CACUGG CU     U
                   CCCACGGGUCC GGUUC AAGACA    GUGACU GA     C
CGUCCAGGACGCCACGGCC           U^    -      CUAC      -  CGGGU 
       110       100        90         80        70         60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archives.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-148-P4_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCUGUCCUACACUGGGCU -23
Get sequence
Mature sequence

Tgu-Mir-148-P4_3p
mirBase accessionNone
Sequence 
37- UCAGUGCAUCACAGAACUUGGU -59
Get sequence