Mir-148-P4a

MirGeneDB ID

Xla-Mir-148-P4a

Family name

MIR-148 (all species)

Seed

AAGUUCU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-148b

Paralogues

Xla-Mir-148-P1a Xla-Mir-148-P1b Xla-Mir-148-P4b

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xtr-Mir-148-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 147746357-147746417 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAACUAUGAGCGAGGAACAGCGUUUGAGGUGAAGUUCUGUUUUACACUCCGGCUGUGAGUAAGUGGAAGUCAGUGCAUCACAGAACUUUGUCUCGAGGGCUUUACUGCUUCACUAAAAUGA

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Structure

        10          20        30        40        50        60 
GAACUAUGAGCGAGGAAC--|  G       UG         UUUA    CC    GUGAGU 
                    AGC UUUGAGG  AAGUUCUGU    CACU  GGCU      \
                    UCG GAGCUCU  UUCAAGACA    GUGA  CUGA      A
AGUAAAAUCACUUCGUCAUU^  G       GU         CUAC    --    AGGUGA 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-148-P4a_5p

mirBase accession

MIMAT0046468

Sequence

0- GAAGUUCUGUUUUACACUCCGGCU -24

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Co-mature sequence

Xla-Mir-148-P4a_3p

mirBase accession

MIMAT0046469

Sequence

39- UCAGUGCAUCACAGAACUUUGU -61

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