Mir-148-P4

MirGeneDB ID

Rno-Mir-148-P4

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-148b

Paralogues

Rno-Mir-148-P1 Rno-Mir-148-P3

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr7: 144912061-144912119 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUUUACAGGCACUCUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUGCCCAUUUG

Get precursor sequence

Structure

        10          20        30        40        50          
UCAUUUACAGGCACUCUU--|  A       UG         U  A    CA    GUGGC 
                    AGC UUUGAGG  AAGUUCUGU AU CACU  GGCU     \
                    UCG AAGCUCU  UUCAAGACA UA GUGA  CUGA     U
GUUUACCCGUCGACGAUCUU^  A       GU         C  C    --    AAGUC 
       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-148-P4_5p*

mirBase accession

MIMAT0004645

Sequence

0- GAAGUUCUGUUAUACACUCAGGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004645
TargetScanVert: rno-miR-148b-5p
miRDB: MIMAT0004645

Mature sequence

Rno-Mir-148-P4_3p

mirBase accession

MIMAT0000579

Sequence

37- UCAGUGCAUCACAGAACUUUGU -59

Get sequence

Proposed targets

microrna.org: MIMAT0000579
TargetScanVert: rno-miR-148b-3p
miRDB: MIMAT0000579