MirGeneDB ID | Cmi-Mir-148-P4 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-148-P1
Cmi-Mir-148-P2
Cmi-Mir-148-P3
|
Orthologues |
Aca-Mir-148-P4
Ami-Mir-148-P4
Bta-Mir-148-P4
Cfa-Mir-148-P4
Cja-Mir-148-P4
Cli-Mir-148-P4
Cpi-Mir-148-P4
Cpo-Mir-148-P4
Dno-Mir-148-P4
Ebu-Mir-148
Eca-Mir-148-P4
Ete-Mir-148-P4
Gga-Mir-148-P4
Gja-Mir-148-P4
Hsa-Mir-148-P4
Laf-Mir-148-P4
Lch-Mir-148-P4
Loc-Mir-148-P4
Mml-Mir-148-P4
Mmr-Mir-148-P4
Mmu-Mir-148-P4
Mun-Mir-148-P4
Neu-Mir-148-P4
Ocu-Mir-148-P4
Pab-Mir-148-P4
Pbv-Mir-148-P4
Rno-Mir-148-P4
Sha-Mir-148-P4
Spt-Mir-148-P4
Tgu-Mir-148-P4
Xla-Mir-148-P4a
Xla-Mir-148-P4b
Xtr-Mir-148-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI638125.1: 5404-5461 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGGCUGAAGAGAGACUGGCUCCCAAGCUGAAGUUCUGUCAUACACUCAGGCUGUAGCUAAUGGAAGUCAGUGCAUCACAGAACUUUGACUCGAGAUUGCCAUCGCCACGUGACGUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGCUGAAGAGAGACUGG----| CCA CU C A CA GUAGC
CUC AG GAAGUUCUGU AU CACU GGCU U
GAG UC UUUCAAGACA UA GUGA CUGA A
GUUGCAGUGCACCGCUACCGUUA^ C-- AG C C -- AGGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Given the position of the Drosha cut on the 5p arm it appears that the 3p arm is mono-adenylated. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-148-P4_5p* |
mirBase accession | None |
Sequence |
0- AAGUUCUGUCAUACACUCAGGCU -23
Get sequence
|
Mature sequence |
Cmi-Mir-148-P4_3p |
mirBase accession | None |
Sequence |
37- UCAGUGCAUCACAGAACUUUG -58
Get sequence
|