MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-148-P2

Family name MIR-148 (all species)
Seed CAGUGCA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-148-P1  Cmi-Mir-148-P3  Cmi-Mir-148-P4 
Orthologues Dre-Mir-148-P2  Ebu-Mir-148  Gmo-Mir-148-P2  Loc-Mir-148-P2  Mal-Mir-148-P2  Pma-Mir-148-o2  Tni-Mir-148-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635868.1: 5439530-5439588 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAAAAGUAAGGAAAGACUUUCAAAGGAAAGUUCUCUGAUACACUUGGACUUUCUAUUUAUUACAGUCAGUGCAUCACAGAACUUUGUUUUGGGAGUUUCUACUCGUGUUCUGAGCA
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Structure
        10          20        30        40        50          
UAUUAAAAGUAAGGAAA--|   UU     G        C    A    UG    UUCUAU 
                   GACU  CAAAG AAAGUUCU UGAU CACU  GACU      \
                   UUGA  GUUUU UUUCAAGA ACUA GUGA  CUGA      U
ACGAGUCUUGUGCUCAUCU^   GG     G        C    C    --    CAUUAU 
       110       100        90        80          70
Deep sequencing
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CommentThe 3' end of the 3p arm is mono-adenylated.
3' NTU No
MotifsNo
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-148-P2_5p*

mirBase accessionNone
Sequence
0- AAGUUCUCUGAUACACUUGGACU -23
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Mature sequence

Cmi-Mir-148-P2_3p

mirBase accessionNone
Sequence
38- UCAGUGCAUCACAGAACUUUG -59
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