| MirGeneDB ID | Mal-Mir-148-P2 |
|---|
| Family name |
MIR-148 (all species) |
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| Seed |
CAGUGCA |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-148-P3
|
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| Orthologues |
Cmi-Mir-148-P2
Dre-Mir-148-P2
Ebu-Mir-148
Gmo-Mir-148-P2
Loc-Mir-148-P2
Pma-Mir-148-o2
Tni-Mir-148-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884718.1: 1025614-1025671 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUAUGAGGUGGCACUGUGGCUUUCCAAAUAAAGUUCUGUGAUACACUUAGACUCUAAUUGCCUGCAGUCAGUGCAUUACAGAACUUUGUUUUGGGAGUUAAUACUUUAACCAGUGGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAUGAGGUGGCACUGU--| UU C A UA CUAAU
GGCU C AAAUAAAGUUCUGUGAU CACU GACU U
UUGA G UUUGUUUCAAGACAUUA GUGA CUGA G
AGGGUGACCAAUUUCAUAA^ GG U C -- CGUCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | The highest read count is monoadenylated at the 3' end of the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Mal-Mir-148-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAGUUCUGUGAUACACUUAGACU -23
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-148-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCAGUGCAUUACAGAACUUUG -58
Get sequence
|
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