MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-148-P4

Family name MIR-148 (all species)
Seed CAGUGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-148b
Paralogues Xtr-Mir-148-P1 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cja-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Hsa-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr2: 142379073-142379133 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAUGCGAAUGAGGAACAGCGUUUGAGGUGAAGUUCUGUUAUACACUCCGGCUGUGAGUAAGUGGAAGUCAGUGCAUCACAGAACUUUGUCUCGAGGGCUUCACUACUCCAUUAAAGUGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UACAUGCGAAUGAGGAAC--|  G       UG         U  A    CC    GUGAGU 
                    AGC UUUGAGG  AAGUUCUGU AU CACU  GGCU      \
                    UCG GAGCUCU  UUCAAGACA UA GUGA  CUGA      A
AGUGAAAUUACCUCAUCACU^  G       GU         C  C    --    AGGUGA 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-148-P4_5p*
mirBase accessionNone
Sequence 
0- GAAGUUCUGUUAUACACUCCGGCU -24
Get sequence
Mature sequence

Xtr-Mir-148-P4_3p
mirBase accessionMIMAT0003605
Sequence 
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
Proposed targets TargetScanVert: xtr-miR-148b