MirGeneDB 3.0

MirGeneDB ID

Hsa-Mir-148-P4

Family name MIR-148 (all species)
Seed CAGUGCA
Species Human (Homo sapiens)
MiRBase ID hsa-mir-148b
Paralogues Hsa-Mir-148-P1  Hsa-Mir-148-P3 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cja-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr12: 54337239-54337299 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUUUCCAAGCACGAUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCCAUUUU
Get precursor sequence
Structure
        10          20        30        40        50        60 
UCAUUUCCAAGCACGAUU--|  A       UG         U  A    CA    GUGGCU 
                    AGC UUUGAGG  AAGUUCUGU AU CACU  GGCU      \
                    UCG AAGCUCU  UUCAAGACA UA GUGA  CUGA      C
UUUUACCCAUCGACGAUCUU^  A       GU         C  C    --    AAGUCU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-148-P4_5p*

mirBase accessionMIMAT0004699
Sequence
0- GAAGUUCUGUUAUACACUCAGGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0004699
TargetScanVert: hsa-miR-148b-5p
TargetMiner: hsa-miR-148b-5p
miRDB: MIMAT0004699
Mature sequence

Hsa-Mir-148-P4_3p

mirBase accessionMIMAT0000759
Sequence
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence
Proposed targets microrna.org: MIMAT0000759
TargetScanVert: hsa-miR-148b-3p
TargetMiner: hsa-miR-148b-3p
miRDB: MIMAT0000759