MirGeneDB ID | Gga-Mir-148-P4 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-148b
|
Paralogues |
Gga-Mir-148-P1
|
Orthologues |
Aca-Mir-148-P4
Ami-Mir-148-P4
Bta-Mir-148-P4
Cfa-Mir-148-P4
Cja-Mir-148-P4
Cli-Mir-148-P4
Cmi-Mir-148-P4
Cpi-Mir-148-P4
Cpo-Mir-148-P4
Dno-Mir-148-P4
Ebu-Mir-148
Eca-Mir-148-P4
Ete-Mir-148-P4
Gja-Mir-148-P4
Hsa-Mir-148-P4
Laf-Mir-148-P4
Lch-Mir-148-P4
Loc-Mir-148-P4
Mml-Mir-148-P4
Mmr-Mir-148-P4
Mmu-Mir-148-P4
Mun-Mir-148-P4
Neu-Mir-148-P4
Ocu-Mir-148-P4
Pab-Mir-148-P4
Pbv-Mir-148-P4
Rno-Mir-148-P4
Sha-Mir-148-P4
Spt-Mir-148-P4
Tgu-Mir-148-P4
Xla-Mir-148-P4a
Xla-Mir-148-P4b
Xtr-Mir-148-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gallus_gallus.GRCg6a) |
33: 7737151-7737210 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGCCCACCCACCCUGGCAGCGCCCGGGCCGAGGUUCUGUCCUACACUCCGGCUGUGGCUAUGGGCAGUCAGUGCAUCACAGAACUUGGUCCCGGGAGCUCAGCAGCGACGGGGGGCGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGCCCACCCACCCUGGC-- G -| G CCUA CC GUGGC
AGC CCCGGG CCGAG UUCUGU CACU GGCU U
UCG GGGCCC GGUUC AAGACA GUGA CUGA A
CAGCGGGGGGCAGCGACGAC A U^ - CUAC -- CGGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Star sequence |
Gga-Mir-148-P4_5p* |
mirBase accession | MIMAT0050026 |
Sequence |
0- GAGGUUCUGUCCUACACUCCGGCU -24
Get sequence
|
Mature sequence |
Gga-Mir-148-P4_3p |
mirBase accession | MIMAT0050027 |
Sequence |
38- UCAGUGCAUCACAGAACUUGGU -60
Get sequence
|