MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-148-P4

Family name MIR-148 (all species)
Seed CAGUGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-148b
Paralogues Ami-Mir-148-P3 
Orthologues Aca-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cja-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Hsa-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712407.1: 40039-40097 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCCCGGGGGCGGCUGGUGGCCUUUGAGGCGGAGUUCUGUCAUACACUCGGACUGUGCUACCUGGGGUCAGUGCAUCACAGAACUUUGUCUCGAGCGCCCGGAUCCGUCGGUGCCCCCG
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Structure
        10          20        30        40        50          
GCCCCGGGGGCGGCUGGU--|  C                  C  A    CG    GUGCU 
                    GGC UUUGAGGCGGAGUUCUGU AU CACU  GACU     \
                    CCG GAGCUCUGUUUCAAGACA UA GUGA  CUGG     A
GCCCCCGUGGCUGCCUAGGC^  C                  C  C    --    GGUCC 
       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Ami-Mir-148-P4_5p*
mirBase accessionMIMAT0038178
Sequence 
0- GGAGUUCUGUCAUACACUCGGACU -24
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Mature sequence

Ami-Mir-148-P4_3p
mirBase accessionMIMAT0038179
Sequence 
37- UCAGUGCAUCACAGAACUUUGU -59
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