Mir-148-P4

MirGeneDB ID

Pbv-Mir-148-P4

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-148b

Paralogues

Pbv-Mir-148-P1

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953059.1: 20840-20900 [+]

Precursor
(pre-Mir +30nt flank)

CCAGAGAGGACCUGUUACAGCGCUUGAGGUGAAGUUCUGUUAUACACUUUGACUGUGGCUACAUGGAAGUCAGUGCAUCACAGAACUUUGUCUCGAGAGCUUUUCAGCAUCCAGCAGGGAA

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Structure

        10          20        30        40        50        60 
CCAGAGAGGACCUGUUAC--|  G       UG         U  A    UU    GUGGCU 
                    AGC CUUGAGG  AAGUUCUGU AU CACU  GACU      \
                    UCG GAGCUCU  UUCAAGACA UA GUGA  CUGA      A
AAGGGACGACCUACGACUUU^  A       GU         C  C    --    AGGUAC 
 .       110       100        90        80          70

Deep sequencing

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Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Pbv-Mir-148-P4_5p*

mirBase accession

MIMAT0038966

Sequence

0- GAAGUUCUGUUAUACACUUUGACU -24

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Mature sequence

Pbv-Mir-148-P4_3p

mirBase accession

MIMAT0038967

Sequence

39- UCAGUGCAUCACAGAACUUUGU -61

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