Mir-148-P3

MirGeneDB ID

Hsa-Mir-148-P3

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-152

Paralogues

Hsa-Mir-148-P1 Hsa-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 48037174-48037232 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGCUCGGCCCGCUGUCCCCCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGAAGGACCUUCUGCACCCAACGGGC

Get precursor sequence

Structure

        10          20        30        40        50          
GGAGGCUCGGCCCGCUG--|  CC  C              G  A    CC    CGGGCU 
                   UCC  CC GGCCCAGGUUCUGU AU CACU  GACU      \
                   AGG  GG CCGGGUUCAAGACA UA GUGA  CUGA      C
CGGGCAACCCACGUCUUCC^  AA  C              G  C    --    CGAGGU 
       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-148-P3_5p*

mirBase accession

MIMAT0026479

Sequence

0- AGGUUCUGUGAUACACUCCGACU -23

Get sequence

Proposed targets

TargetScanVert: hsa-miR-152-5p
miRDB: MIMAT0026479

Mature sequence

Hsa-Mir-148-P3_3p

mirBase accession

MIMAT0000438

Sequence

38- UCAGUGCAUGACAGAACUUGG -59

Get sequence

Proposed targets

microrna.org: MIMAT0000438
TargetScanVert: hsa-miR-152-3p
miRDB: MIMAT0000438