Mir-148-P3

MirGeneDB ID

Sto-Mir-148-P3

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-148-P1

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005756.1: 59573-59635 [-]

Precursor
(pre-Mir +30nt flank)

AGGAUCCGCCGUGCAGAGGUCUCCCAAGCCGAAGGUUCUGUCAUACACUCCGGCUCUGUAACUGAGAAAAGUCAGUGCAUGACAGAACUUUGUUUUGGAAAGACCCCAACUACAAACUAAAAC

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Structure

        10         20         30        40        50        60  
AGGAUCCGCCGUGCAGA-     C-|    C     G         A    CC    CUGUAA 
                  GGUCU  CCAAG CGAAG UUCUGUCAU CACU  GGCU      C
                  CCAGA  GGUUU GUUUC AAGACAGUA GUGA  CUGA      U
CAAAAUCAAACAUCAACC     AA^    U     -         C    --    AAAGAG 
 120       110       100        90         80          70

Deep sequencing

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Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sto-Mir-148-P3_5p*

mirBase accession

None

Sequence

0- GAAGGUUCUGUCAUACACUCCGGCU -25

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Mature sequence

Sto-Mir-148-P3_3p

mirBase accession

None

Sequence

41- UCAGUGCAUGACAGAACUUUGU -63

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