MirGeneDB ID | Oan-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Platypus (Ornithorhynchus anatinus) |
MiRBase ID |
|
Paralogues |
Oan-Mir-148-P1
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (mOrnAna1.p.v1_plustraces) |
NC_041738.1: 57629707-57629767 [-]
|
Precursor (pre-Mir +30nt flank) |
CGGGGCCGCGGCCCCCCGGUCCCCCGGGCCCAGGUUCUGUCAUGCACUCGGACCUGGACUCUGGAGCGGUCAGUGCAUGACAGAACUUGGGCCUGGACGGACCUUCCUCACGGAGCACGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGGGCCGCGGCCCCCC- C-| CG UGGACU
GGUCC CCGGGCCCAGGUUCUGUCAUGCACU GACC \
CCAGG GGUCCGGGUUCAAGACAGUACGUGA CUGG C
CCGCACGAGGCACUCCUU CA^ -- CGAGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Oan-Mir-148-P3_5p* |
mirBase accession | None |
Sequence |
0- CAGGUUCUGUCAUGCACUCGGACC -24
Get sequence
|
Mature sequence |
Oan-Mir-148-P3_3p |
mirBase accession | None |
Sequence |
39- UCAGUGCAUGACAGAACUUGGG -61
Get sequence
|