MirGeneDB ID | Bta-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-152
|
Paralogues |
Bta-Mir-148-P1
Bta-Mir-148-P4
|
Orthologues |
Ami-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037346.1: 38444489-38444547 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGAGCUCGGCGCCGCUGUCCUCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGACGGACCUUCUGCACCCAAUGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGAGCUCGGCGCCGCU- -| C G A CC CGGGCU
GUCC UCC GGCCCAGGUUCUGU AU CACU GACU \
CAGG AGG CCGGGUUCAAGACA UA GUGA CUGA C
CGGGUAACCCACGUCUUC C^ C G C -- CGAGGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-148-P3_5p* |
mirBase accession | None |
Sequence |
0- AGGUUCUGUGAUACACUCCGACU -23
Get sequence
|
Mature sequence |
Bta-Mir-148-P3_3p |
mirBase accession | MIMAT0009238 |
Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-152
|