| MirGeneDB ID | Cja-Mir-148-P3 |
|---|---|
| Family name | MIR-148 (all species) |
| Seed | CAGUGCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-148-P1 Cja-Mir-148-P4 |
| Orthologues | Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 114337348-114337406 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGAGGCUCGGCCCGCUGUCCCCCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGUAGUCAGUGCAUGACAGAACUUGGGCCCGGAAGGACCUUCUGCACCCAACGGGCGet precursor sequence |
| Structure | 10 20 30 40 50 GGAGGCUCGGCCCGCUG--| CC C G A CC CUCGGGCU UCC CC GGCCCAGGUUCUGU AU CACU GA \ AGG GG CCGGGUUCAAGACA UA GUGA CU C CGGGCAACCCACGUCUUCC^ AA C G C -- GAUGAGGU 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-148-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGUUCUGUGAUACACUCCGA -21
Get sequence
|
| Mature sequence | Cja-Mir-148-P3_3p |
| mirBase accession | None |
| Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|
