| MirGeneDB ID | Spt-Mir-148-P3 |
|---|---|
| Family name | MIR-148 (all species) |
| Seed | CAGUGCA |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-148-P1 Spt-Mir-148-P4 |
| Orthologues | Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01013663.1: 823442-823500 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAUCCUGUCCUCCUCAGUCCUCUCAGCCUAGGUUCUGUGGUACACUUGGACUCGGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGAUUUGGAUGGACCUAUCUGCACAGCUGAGCGet precursor sequence |
| Structure | 10 20 30 40 50 UGAUCCUGUCCUCCUCA- -| C GC G A UG CGGACU GUCC UCU A CUAGGUUCUGU GU CACU GACU \ CAGG AGG U GGUUCAAGACA UA GUGA CUGA C CGAGUCGACACGUCUAUC U^ U UA G C -- CGAGGU 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-148-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGUUCUGUGGUACACUUGGACU -23
Get sequence
|
| Mature sequence | Spt-Mir-148-P3_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|
