Mir-133-P1-v2

MirGeneDB ID

Hsa-Mir-133-P1-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-133a-1

Paralogues

Hsa-Mir-133-P1-v1 Hsa-Mir-133-P2-v1 Hsa-Mir-133-P2-v2 Hsa-Mir-133-P3-v1 Hsa-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P1-v1 Aca-Mir-133-P1-v2 Aga-Mir-133 Ami-Mir-133-P1-v1 Ami-Mir-133-P1-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P1-v1 Bta-Mir-133-P1-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P1-v1 Cfa-Mir-133-P1-v2 Cin-Mir-133 Cja-Mir-133-P1 Cli-Mir-133-P1-v1 Cli-Mir-133-P1-v2 Cmi-Mir-133-P1-v1 Cmi-Mir-133-P1-v2 Cpi-Mir-133-P1-v1 Cpi-Mir-133-P1-v2 Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P1-v1 Dno-Mir-133-P1-v2 Dpu-Mir-133 Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P1-v1 Eca-Mir-133-P1-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P1-v1 Ete-Mir-133-P1-v2 Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gja-Mir-133-P1-v1 Gja-Mir-133-P1-v2 Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Laf-Mir-133-P1-v1 Laf-Mir-133-P1-v2 Lan-Mir-133 Lch-Mir-133-P1 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P1-v1 Loc-Mir-133-P1-v2 Mal-Mir-133-P1-v1 Mal-Mir-133-P1-v2 Mdo-Mir-133-P1-v1 Mdo-Mir-133-P1-v2 Mgi-Mir-133 Mml-Mir-133-P1-v1 Mml-Mir-133-P1-v2 Mmr-Mir-133-P1-v1 Mmr-Mir-133-P1-v2 Mmu-Mir-133-P1-v1 Mmu-Mir-133-P1-v2 Mom-Mir-133 Mun-Mir-133-P1-v1 Mun-Mir-133-P1-v2 Neu-Mir-133-P1-v1 Neu-Mir-133-P1-v2 Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Obi-Mir-133 Ocu-Mir-133-P1-v1 Ocu-Mir-133-P1-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P1 Pau-Mir-133 Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o1-v1 Pma-Mir-133-o1-v2 Pve-Mir-133 Rno-Mir-133-P1-v1 Rno-Mir-133-P1-v2 Rph-Mir-133 Sha-Mir-133-P1-v1 Sha-Mir-133-P1-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P1 Spu-Mir-133 Sto-Mir-133-P1-v1 Sto-Mir-133-P1-v2 Tca-Mir-133 Tgu-Mir-133-P1-v1 Tgu-Mir-133-P1-v2 Tni-Mir-133-P1-v1 Tni-Mir-133-P1-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr18: 21825711-21825770 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P1-v2)

Mir-133-P1-v1 chr18: 21825711-21825770 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 21825711-21825770 [-] UCSC Ensembl
Mir-1-P1 chr18: 21829015-21829075 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAACUAGCAGCACUACAAUGCUUUGCUAGAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUACUACGGGACAACCA

Get precursor sequence

Structure

        10          20        30        40        50         
CAAACUAGCAGCACUAC--|    UUU    G       AA  U  A       CGCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
ACCAACAGGGCAUCAUUAG^    UAU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-133-P1-v2_5p*

mirBase accession

MIMAT0026478

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

Get sequence

Proposed targets

TargetScanVert: hsa-miR-133a-5p
miRDB: MIMAT0026478

Mature sequence

Hsa-Mir-133-P1-v2_3p

mirBase accession

MIMAT0000427

Sequence

38- UUGGUCCCCUUCAACCAGCUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000427
TargetScanVert: hsa-miR-133a-3p.2
miRDB: MIMAT0000427