Mir-133-P1-v1

MirGeneDB ID

Mmu-Mir-133-P1-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-133a-1

Paralogues

Mmu-Mir-133-P1-v2 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mmu-Mir-133-P3-v1 Mmu-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P1-v1 Aca-Mir-133-P1-v2 Aga-Mir-133 Ami-Mir-133-P1-v1 Ami-Mir-133-P1-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P1-v1 Bta-Mir-133-P1-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P1-v1 Cfa-Mir-133-P1-v2 Cin-Mir-133 Cja-Mir-133-P1 Cli-Mir-133-P1-v1 Cli-Mir-133-P1-v2 Cmi-Mir-133-P1-v1 Cmi-Mir-133-P1-v2 Cpi-Mir-133-P1-v1 Cpi-Mir-133-P1-v2 Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P1-v1 Dno-Mir-133-P1-v2 Dpu-Mir-133 Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P1-v1 Eca-Mir-133-P1-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P1-v1 Ete-Mir-133-P1-v2 Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gja-Mir-133-P1-v1 Gja-Mir-133-P1-v2 Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P1-v1 Hsa-Mir-133-P1-v2 Isc-Mir-133 Laf-Mir-133-P1-v1 Laf-Mir-133-P1-v2 Lan-Mir-133 Lch-Mir-133-P1 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P1-v1 Loc-Mir-133-P1-v2 Mal-Mir-133-P1-v1 Mal-Mir-133-P1-v2 Mdo-Mir-133-P1-v1 Mdo-Mir-133-P1-v2 Mgi-Mir-133 Mml-Mir-133-P1-v1 Mml-Mir-133-P1-v2 Mmr-Mir-133-P1-v1 Mmr-Mir-133-P1-v2 Mom-Mir-133 Mun-Mir-133-P1-v1 Mun-Mir-133-P1-v2 Neu-Mir-133-P1-v1 Neu-Mir-133-P1-v2 Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Obi-Mir-133 Ocu-Mir-133-P1-v1 Ocu-Mir-133-P1-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P1 Pau-Mir-133 Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o1-v1 Pma-Mir-133-o1-v2 Pve-Mir-133 Rno-Mir-133-P1-v1 Rno-Mir-133-P1-v2 Rph-Mir-133 Sha-Mir-133-P1-v1 Sha-Mir-133-P1-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P1 Spu-Mir-133 Sto-Mir-133-P1-v1 Sto-Mir-133-P1-v2 Tca-Mir-133 Tgu-Mir-133-P1-v1 Tgu-Mir-133-P1-v2 Tni-Mir-133-P1-v1 Tni-Mir-133-P1-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr18: 10782912-10782971 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P1-v1)

Mir-133-P1-v1 chr18: 10782912-10782971 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 10782912-10782971 [-] UCSC Ensembl
Mir-1-P1 chr18: 10785485-10785545 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUACACCAGCAGCGGCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUACACAUGGACAGCCA

Get precursor sequence

Structure

        10          20        30        40        50         
CCUACACCAGCAGCGGC--|    UUU    A       AA  U  A        GCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUAG     U
ACCGACAGGUACACAUUAG^    UAU    G       AC  C  C        GUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-133-P1-v1_5p*

mirBase accession

MIMAT0003473

Sequence

0- AGCUGGUAAAAUGGAACCAAAUC -23

Get sequence

Proposed targets

microrna.org: MIMAT0003473
TargetScanVert: mmu-miR-133a-5p
miRDB: MIMAT0003473

Mature sequence

Mmu-Mir-133-P1-v1_3p

mirBase accession

MIMAT0000145

Sequence

37- UUUGGUCCCCUUCAACCAGCUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000145
TargetScanVert: mmu-miR-133a-3p.2
miRDB: MIMAT0000145