Mir-133-P1-v2

MirGeneDB ID

Rno-Mir-133-P1-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-133a

Paralogues

Rno-Mir-133-P1-v1 Rno-Mir-133-P2-v1 Rno-Mir-133-P2-v2 Rno-Mir-133-P3-v1 Rno-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P1-v1 Aca-Mir-133-P1-v2 Aga-Mir-133 Ami-Mir-133-P1-v1 Ami-Mir-133-P1-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P1-v1 Bta-Mir-133-P1-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P1-v1 Cfa-Mir-133-P1-v2 Cin-Mir-133 Cja-Mir-133-P1 Cli-Mir-133-P1-v1 Cli-Mir-133-P1-v2 Cmi-Mir-133-P1-v1 Cmi-Mir-133-P1-v2 Cpi-Mir-133-P1-v1 Cpi-Mir-133-P1-v2 Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P1-v1 Dno-Mir-133-P1-v2 Dpu-Mir-133 Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P1-v1 Eca-Mir-133-P1-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P1-v1 Ete-Mir-133-P1-v2 Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gja-Mir-133-P1-v1 Gja-Mir-133-P1-v2 Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P1-v1 Hsa-Mir-133-P1-v2 Isc-Mir-133 Laf-Mir-133-P1-v1 Laf-Mir-133-P1-v2 Lan-Mir-133 Lch-Mir-133-P1 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P1-v1 Loc-Mir-133-P1-v2 Mal-Mir-133-P1-v1 Mal-Mir-133-P1-v2 Mdo-Mir-133-P1-v1 Mdo-Mir-133-P1-v2 Mgi-Mir-133 Mml-Mir-133-P1-v1 Mml-Mir-133-P1-v2 Mmr-Mir-133-P1-v1 Mmr-Mir-133-P1-v2 Mmu-Mir-133-P1-v1 Mmu-Mir-133-P1-v2 Mom-Mir-133 Mun-Mir-133-P1-v1 Mun-Mir-133-P1-v2 Neu-Mir-133-P1-v1 Neu-Mir-133-P1-v2 Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Obi-Mir-133 Ocu-Mir-133-P1-v1 Ocu-Mir-133-P1-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P1 Pau-Mir-133 Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o1-v1 Pma-Mir-133-o1-v2 Pve-Mir-133 Rph-Mir-133 Sha-Mir-133-P1-v1 Sha-Mir-133-P1-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P1 Spu-Mir-133 Sto-Mir-133-P1-v1 Sto-Mir-133-P1-v2 Tca-Mir-133 Tgu-Mir-133-P1-v1 Tgu-Mir-133-P1-v2 Tni-Mir-133-P1-v1 Tni-Mir-133-P1-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr18: 2052491-2052550 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P1-v2)

Mir-133-P1-v1 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-133-P1-v2 chr18: 2052491-2052550 [-] UCSC Ensembl
Mir-1-P1 chr18: 2054945-2055005 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUAAACCAGCAGCGGCAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCGCCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUAUGCAUUGAUUGCCACAGGACAGCCA

Get precursor sequence

Structure

        10          20        30        40        50         
CCUAAACCAGCAGCGGC--|    UUU    A       AA  U  A       CGCCUC 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUA      U
ACCGACAGGACACCGUUAG^    UAU    G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-133-P1-v2_5p*

mirBase accession

MIMAT0017124

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-133a-5p
miRDB: MIMAT0017124

Mature sequence

Rno-Mir-133-P1-v2_3p

mirBase accession

MIMAT0000839

Sequence

38- UUGGUCCCCUUCAACCAGCUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000839
TargetScanVert: rno-miR-133a-3p
miRDB: MIMAT0000839