MirGeneDB ID | Laf-Mir-769-P1 |
---|---|
Family name | MIR-769 (all species) |
Seed | GAGACCU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-769-P2 Laf-Mir-769-P3 |
Orthologues | Bta-Mir-769 Cfa-Mir-769 Cja-Mir-769 Cpo-Mir-769 Dno-Mir-769 Ete-Mir-769 Hsa-Mir-769 Mml-Mir-769 Mmr-Mir-769 Pab-Mir-769 |
Node of Origin (locus) | L. africana |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 5172047-5172107 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGACUCGGUGCCGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUCGCUUCUGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGGUCGGGGCCUGUGGGUUCCGAGAGCGet precursor sequence |
Structure | 10 20 30 40 50 UGACUCGGUGCCGAUUC--| G C UG U U G GUGAUGU CU GGCUCUGA C AGACCUC GGG UCU AGCU \ GG CUGGGACU G UCUGGGG CUC AGG UCGA C CGAGAGCCUUGGGUGUCCG^ G U GU C U G GUCUUCG . 110 100 90 80 70 |
Deep sequencing | |
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU | No |
Motifs | UGUG in loop |
Mature sequence | Laf-Mir-769-P1_5p |
mirBase accession | None |
Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
Star sequence | Laf-Mir-769-P1_3p* |
mirBase accession | None |
Sequence |
39- CUGGGAUCUCCGGGGUCUUGGU -61
Get sequence
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