MirGeneDB ID | Laf-Mir-769-P2 |
Family name |
MIR-769 (all species) |
Seed |
GAGACCU |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-769-P1
Laf-Mir-769-P3
|
Orthologues |
Bta-Mir-769
Cfa-Mir-769
Cja-Mir-769
Cpo-Mir-769
Dno-Mir-769
Ete-Mir-769
Hsa-Mir-769
Mml-Mir-769
Mmr-Mir-769
Pab-Mir-769
|
Node of Origin (locus) |
L. africana
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 5232861-5232921 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGACUCGGUGCCGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUCGCUUCUGAGCUGGGACCUCCGGGGUCUUGGUUCAGGGUCGGGGCCUCUAGGUUCCGAGCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGACUCGGUGCCGAUUC--| G C UG U U G GUGAUGU
CU GGCUCUGA C AGACCUC GGG UCU AGCU \
GG CUGGGACU G UCUGGGG CUC AGG UCGA C
CACGAGCCUUGGAUCUCCG^ G U GU C C G GUCUUCG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-769-P2_5p |
mirBase accession | None |
Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
Star sequence |
Laf-Mir-769-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CUGGGACCUCCGGGGUCUUGGU -61
Get sequence
|