| MirGeneDB ID | Laf-Mir-769-P3 |
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| Family name |
MIR-769 (all species) |
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| Seed |
GAGACCU |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
Laf-Mir-769-P1
Laf-Mir-769-P2
|
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| Orthologues |
Bta-Mir-769
Cfa-Mir-769
Cja-Mir-769
Cpo-Mir-769
Dno-Mir-769
Ete-Mir-769
Hsa-Mir-769
Mml-Mir-769
Mmr-Mir-769
Pab-Mir-769
|
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| Node of Origin (locus) |
L. africana
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010031.1: 5322203-5322282 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGACUCGGUGCAGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUGGGUUCUGAGCUGUGAUGUCGCUUCUGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGGUCGGGUCCUCUGGGUUCCGAGAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGACUCGGUGCAGAUUC--| G C UG U U G GUGAUGUGGGUUCUGA
CU GGCUCUGA C AGACCUC GGG UCU AGCU G
GG CUGGGACU G UCUGGGG CUC AGG UCGA C
CGAGAGCCUUGGGUCUCCU^ G U GU C U G GUCUUCGCUGUAGUGU
. 130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-769-P3_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
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| Star sequence |
Laf-Mir-769-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
58- CUGGGAUCUCCGGGGUCUUGGU -80
Get sequence
|
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