| MirGeneDB ID | Laf-Mir-769-P3 |
|---|---|
| Family name | MIR-769 (all species) |
| Seed | GAGACCU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-769-P1 Laf-Mir-769-P2 |
| Orthologues | Bta-Mir-769 Cfa-Mir-769 Cja-Mir-769 Cpo-Mir-769 Dno-Mir-769 Ete-Mir-769 Hsa-Mir-769 Mml-Mir-769 Mmr-Mir-769 Pab-Mir-769 |
| Node of Origin (locus) | L. africana |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 5322203-5322282 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGACUCGGUGCAGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUGUGGGUUCUGAGCUGUGAUGUCGCUUCUGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGGUCGGGUCCUCUGGGUUCCGAGAGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CGACUCGGUGCAGAUUC--| G C UG U U G GUGAUGUGGGUUCUGA CU GGCUCUGA C AGACCUC GGG UCU AGCU G GG CUGGGACU G UCUGGGG CUC AGG UCGA C CGAGAGCCUUGGGUCUCCU^ G U GU C U G GUCUUCGCUGUAGUGU . 130 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on both arms. |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Mature sequence | Laf-Mir-769-P3_5p |
| mirBase accession | None |
| Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
| Star sequence | Laf-Mir-769-P3_3p* |
| mirBase accession | None |
| Sequence |
58- CUGGGAUCUCCGGGGUCUUGGU -80
Get sequence
|
