| MirGeneDB ID | Cpo-Mir-769 |
|---|
| Family name |
MIR-769 (all species) |
|---|
| Seed |
GAGACCU |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-769
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-769
Cfa-Mir-769
Cja-Mir-769
Dno-Mir-769
Eca-Mir-769-P4
Eca-Mir-769-P5
Ete-Mir-769
Hsa-Mir-769
Laf-Mir-769-P1
Laf-Mir-769-P2
Laf-Mir-769-P3
Mml-Mir-769
Mmr-Mir-769
Pab-Mir-769
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_80: 6337196-6337256 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGCUUGGUGCUGAUUCCUGGGCUCUGACCUGAGACCUCUGGGUUCUGAGCUGUGAUAUUGUUCCUGAGCUGGGAUCUCCGGGGUCUUGGUUCAGGGUCGGGGCCUCUGGGUUCUGAGCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGCUUGGUGCUGAUUC--| G C UG U U G GUGAUAU
CU GGCUCUGA C AGACCUC GGG UCU AGCU \
GG CUGGGACU G UCUGGGG CUC AGG UCGA U
CACGAGUCUUGGGUCUCCG^ G U GU C U G GUCCUUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although the 3' terminal uridine is templated the DcRNA reads in human suggest that this is a Group 2 miRNA. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cpo-Mir-769_5p |
| mirBase accession | MIMAT0047385 |
|---|
| Sequence |
0- UGAGACCUCUGGGUUCUGAGCU -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-769_3p* |
| mirBase accession | MIMAT0047386 |
|---|
| Sequence |
39- CUGGGAUCUCCGGGGUCUUGGU -61
Get sequence
|
|---|
