Mir-124-P19

MirGeneDB ID

Lpo-Mir-124-P19

Family name

MIR-124 (all species)

Seed

AAGGCAC

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-124-P20 Lpo-Mir-124-P21 Lpo-Mir-124-P22 Lpo-Mir-124-P23 Lpo-Mir-124-P24

Orthologues

Aae-Mir-124 Aga-Mir-124 Agr-Mir-124 Asu-Mir-124 Bfl-Mir-124 Bge-Mir-124 Bko-Mir-124 Bla-Mir-124 Bpl-Mir-124 Cel-Mir-124 Cte-Mir-124 Dan-Mir-124 Dlo-Mir-124 Dma-Mir-124 Dme-Mir-124 Dmo-Mir-124 Dpu-Mir-124 Dsi-Mir-124 Dya-Mir-124 Eba-Mir-124 Esc-Mir-124 Gpa-Mir-124 Gsp-Mir-124 Hme-Mir-124 Hru-Mir-124 Isc-Mir-124 Lan-Mir-124 Lhy-Mir-124 Llo-Mir-124 Mgi-Mir-124 Mom-Mir-124 Npo-Mir-124 Obi-Mir-124 Ofu-Mir-124 Ovu-Mir-124 Pau-Mir-124 Pdu-Mir-124 Pfl-Mir-124 Pmi-Mir-124 Pve-Mir-124 Sko-Mir-124 Sma-Mir-124 Sne-Mir-124 Snu-Mir-124 Spu-Mir-124 Sro-Mir-124 Tca-Mir-124 War-Mir-124 Xbo-Mir-124

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665972.1: 499502-499560 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCAUCAUUGGGAUACUUGUCUGACUCUCCGUGUUCAUCGUCUGCCUUGAUGUGUUUGUCAUAUCAUAAGGCACGCGGUGAAUGCCAAGAGGAAGGUUAUUUUUCAUCAAGGAAGAAA

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Structure

        10        20          30        40        50         
UGCCAUCAUUGGGAUACUUG--|  GA    CC           C       A  UGUUU 
                      UCU  CUCU  GUGUUCAUCGU UGCCUUG UG     G
                      GGA  GAGA  CGUAAGUGGCG ACGGAAU AC     U
AAAGAAGGAACUACUUUUUAUU^  AG    AC           C       -  UAUAC 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-124-P19_5p* (predicted)

mirBase accession

None

Sequence

0- CGUGUUCAUCGUCUGCCUUGAUG -23

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Mature sequence

Lpo-Mir-124-P19_3p

mirBase accession

None

Sequence

37- UAAGGCACGCGGUGAAUGCCAA -59

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