MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-124-P20

Family name MIR-124 (all species)
Seed AAGGCAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-124-P21  Lpo-Mir-124-P22  Lpo-Mir-124-P23  Lpo-Mir-124-P24  Lpo-Mir-124-P25 
Orthologues Aae-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Npo-Mir-124  Obi-Mir-124  Ovu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Tca-Mir-124  Xbo-Mir-124 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013694253.1: 345-403 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGGAUUUUGAAGUAAUUGUCUGACUCUCCGUGUUCACUGUUGGCCUUGAUGUGUUGUUAGAACCAUAAGGCACGCGGUGAAUGCCAAGAGGAAGCCUCGAGAACAGCCGUGAAGAAU
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Structure
        10        20          30        40        50         
CAAGGAUUUUGAAGUAAUUGU--| GA    CC           UG      A  UGUUG 
                       CU  CUCU  GUGUUCACUGU  GCCUUG UG     U
                       GA  GAGA  CGUAAGUGGCG  CGGAAU AC     U
UAAGAAGUGCCGACAAGAGCUCC^ AG    AC           CA      -  CAAGA 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-124-P20_5p* (predicted)

mirBase accessionNone
Sequence
0- CGUGUUCACUGUUGGCCUUGAUG -23
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Mature sequence

Lpo-Mir-124-P20_3p

mirBase accessionNone
Sequence
37- UAAGGCACGCGGUGAAUGCCAA -59
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