Mir-506-P29

MirGeneDB ID

Mml-Mir-506-P29

Family name

MIR-506 (all species)

Seed

GAUUGAA

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

Paralogues

Mml-Mir-506-P1 Mml-Mir-506-P2 Mml-Mir-506-P3 Mml-Mir-506-P4d Mml-Mir-506-P4e Mml-Mir-506-P4f Mml-Mir-506-P5 Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c1 Mml-Mir-506-P6c2 Mml-Mir-506-P7a Mml-Mir-506-P8 Mml-Mir-506-P9 Mml-Mir-506-P10 Mml-Mir-506-P11 Mml-Mir-506-P12 Mml-Mir-506-P13

Orthologues

Hsa-Mir-506-P29

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Eutheria

Genome context
(rheMac8_trace)

chrX: 140962192-140962252 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P29)

Mir-506-P6c1 chrX: 140924370-140924427 [-] UCSC Ensembl
Mir-506-P6a chrX: 140933343-140933400 [-] UCSC Ensembl
Mir-506-P1 chrX: 140946831-140946887 [-] UCSC Ensembl
Mir-506-P2 chrX: 140947157-140947214 [-] UCSC Ensembl
Mir-506-P3 chrX: 140953023-140953080 [-] UCSC Ensembl
Mir-506-P8 chrX: 140957066-140957123 [-] UCSC Ensembl
Mir-506-P4e chrX: 140966427-140966484 [-] UCSC Ensembl
Mir-506-P5 chrX: 140974554-140974611 [-] UCSC Ensembl
Mir-506-P7a chrX: 140981185-140981242 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUUAGACAUGCUGUCUGUGGUACCUUACUCGAGAGAGUAGCAAUCACAUAUGGUAAUCACAUAUGAUUGAAACCUCUACGAGUAGUGUAACGCAUGACAUAUGCAGCACAUGUAAU

Get precursor sequence

Structure

        10         20         30         40        50          
CCAUCCUUAGACAUGCU-   -    G   C       -|   A  AG      CAUAUGGU 
                  GUC UGUG UAC UUACUCG AGAG GU  CAAUCA        \
                  CAG ACGC AUG GAUGAGC UCUC CA  GUUAGU        A
UAAUGUACACGACGUAUA   U    A   U       A^   -  AA      AUACACUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-506-P29_5p* (predicted)

mirBase accession

None

Sequence

0- UACUCGAGAGAGUAGCAAUCACA -23

Get sequence

Mature sequence

Mml-Mir-506-P29_3p

mirBase accession

None

Sequence

38- UGAUUGAAACCUCUACGAGUAGU -61

Get sequence