MirGeneDB ID | Pab-Mir-105-P2 |
---|---|
Family name | MIR-105 (all species) |
Seed | CAAAUGC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-105-P1 |
Orthologues | Bta-Mir-105-P2 Cfa-Mir-105-P2 Cja-Mir-105-P2 Eca-Mir-105-P2 Hsa-Mir-105-P2 Mml-Mir-105-P2 Mmr-Mir-105-P2 Ocu-Mir-105-P2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 158891203-158891261 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGUGUUGCAGAACCUGAGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUCAUGCACCACGGAUGUUUGAGCAUGUGCUACGGUGUCUACUUUUGCUACCUUGCUGUCUGet precursor sequence |
Structure | 10 20 30 40 50 UGUGUUGCAGAACCUGA--| U U A UC GCUG GUG GCAUCGUGG CA AUGCUCAGAC CUGUGGUG C CAU UGUGGCAUC GU UACGAGUUUG GGCACCAC U UCUGUCGUUCCAUCGUUUU^ C - G UA GUAC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-105-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCAAAUGCUCAGACUCCUGUGGUG -24
Get sequence
|
Star sequence | Pab-Mir-105-P2_3p* |
mirBase accession | None |
Sequence |
36- CCACGGAUGUUUGAGCAUGUGCU -59
Get sequence
|