| MirGeneDB ID | Pab-Mir-105-P1 |
|---|---|
| Family name | MIR-105 (all species) |
| Seed | CAAAUGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-105-P2 |
| Orthologues | Bta-Mir-105-P1 Cfa-Mir-105-P1 Cja-Mir-105-P1 Cpo-Mir-105-P1 Eca-Mir-105-P1 Ete-Mir-105-P1 Hsa-Mir-105-P1 Mml-Mir-105-P1 Mmr-Mir-105-P1 Mmu-Mir-105-P1 Ocu-Mir-105-P1 Rno-Mir-105-P1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 158893390-158893448 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGUUGCAGAUCUUCUGUGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUUAUGCACCACGGAUGUUUGAGCAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCUGet precursor sequence |
| Structure | 10 20 30 40 50 UGUUGCAGAUCUUCUGU--| U U A UC GCUG GUG GCAUCGUGG CA AUGCUCAGAC CUGUGGUG C CAU UGUGGUAUC GU UACGAGUUUG GGCACCAC U UCUACCGUUACAACGUUUU^ C - G UA GUAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-105-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCAAAUGCUCAGACUCCUGUGGUG -24
Get sequence
|
| Star sequence | Pab-Mir-105-P1_3p* |
| mirBase accession | None |
| Sequence |
36- CCACGGAUGUUUGAGCAUGUGCU -59
Get sequence
|
