MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-105-P1

Family name MIR-105 (all species)
Seed CAAAUGC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-105-P2 
Orthologues Bta-Mir-105-P1  Cfa-Mir-105-P1  Cja-Mir-105-P1  Cpo-Mir-105-P1  Eca-Mir-105-P1  Ete-Mir-105-P1  Hsa-Mir-105-P1  Mml-Mir-105-P1  Mmr-Mir-105-P1  Mmu-Mir-105-P1  Ocu-Mir-105-P1  Rno-Mir-105-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054702.2: 158893390-158893448 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGCAGAUCUUCUGUGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUUAUGCACCACGGAUGUUUGAGCAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCU
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Structure
        10          20        30        40        50         
UGUUGCAGAUCUUCUGU--|  U         U  A          UC        GCUG 
                   GUG GCAUCGUGG CA AUGCUCAGAC  CUGUGGUG    C
                   CAU UGUGGUAUC GU UACGAGUUUG  GGCACCAC    U
UCUACCGUUACAACGUUUU^  C         -  G          UA        GUAU 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-105-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UCAAAUGCUCAGACUCCUGUGGUG -24
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Star sequence

Pab-Mir-105-P1_3p*

mirBase accessionNone
Sequence
36- CCACGGAUGUUUGAGCAUGUGCU -59
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