| MirGeneDB ID | Cja-Mir-105-P1 |
|---|---|
| Family name | MIR-105 (all species) |
| Seed | CAAAUGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-105-P2 |
| Orthologues | Bta-Mir-105-P1 Cfa-Mir-105-P1 Cpo-Mir-105-P1 Eca-Mir-105-P1 Ete-Mir-105-P1 Hsa-Mir-105-P1 Mml-Mir-105-P1 Mmr-Mir-105-P1 Mmu-Mir-105-P1 Ocu-Mir-105-P1 Pab-Mir-105-P1 Rno-Mir-105-P1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 144015123-144015181 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGUUGUGGAUCUUCUGUGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUCAUACACCACGGAUGUUUGAACAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCUGet precursor sequence |
| Structure | 10 20 30 40 50 UGUUGUGGAUCUUCUGU--| U U A C UC GCUG GUG GCAUCGUGG CA AUG UCAGAC CUGUGGUG C CAU UGUGGUAUC GU UAC AGUUUG GGCACCAC U UCUACCGUUACAACGUUUU^ C - G A UA AUAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-105-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCAAAUGCUCAGACUCCUGUGGUG -24
Get sequence
|
| Star sequence | Cja-Mir-105-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- CCACGGAUGUUUGAACAUGUGCU -59
Get sequence
|
