MirGeneDB ID | Cja-Mir-105-P1 |
Family name |
MIR-105 (all species) |
Seed |
CAAAUGC |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-105-P2
|
Orthologues |
Bta-Mir-105-P1
Cfa-Mir-105-P1
Cpo-Mir-105-P1
Eca-Mir-105-P1
Ete-Mir-105-P1
Hsa-Mir-105-P1
Mml-Mir-105-P1
Mmr-Mir-105-P1
Mmu-Mir-105-P1
Ocu-Mir-105-P1
Pab-Mir-105-P1
Rno-Mir-105-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 144015123-144015181 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUGUGGAUCUUCUGUGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUCAUACACCACGGAUGUUUGAACAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUUGUGGAUCUUCUGU--| U U A C UC GCUG
GUG GCAUCGUGG CA AUG UCAGAC CUGUGGUG C
CAU UGUGGUAUC GU UAC AGUUUG GGCACCAC U
UCUACCGUUACAACGUUUU^ C - G A UA AUAC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-105-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCAAAUGCUCAGACUCCUGUGGUG -24
Get sequence
|
Star sequence |
Cja-Mir-105-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
36- CCACGGAUGUUUGAACAUGUGCU -59
Get sequence
|