MirGeneDB ID | Eca-Mir-105-P1 |
Family name |
MIR-105 (all species) |
Seed |
CAAAUGC |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
Eca-Mir-105-P2
|
Orthologues |
Bta-Mir-105-P1
Cfa-Mir-105-P1
Cja-Mir-105-P1
Cpo-Mir-105-P1
Ete-Mir-105-P1
Hsa-Mir-105-P1
Mml-Mir-105-P1
Mmr-Mir-105-P1
Mmu-Mir-105-P1
Ocu-Mir-105-P1
Pab-Mir-105-P1
Rno-Mir-105-P1
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009179.1: 125120699-125120756 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUUACAGGAUAUUGUGUGUGUGCAUCAUGGUCAAAUGCUGAGACUCCUUGGUGGCUGCUUAUGCACCAUGGAUGUUUGAGCAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUACAGGAUAUUGUGU--| U U A G - U GCUG
GUG GCAUCAUGG CA AUGCU AGAC UCC UGGUG C
CAU UGUGGUAUC GU UACGA UUUG AGG ACCAC U
UCUACCGUUACAACGUUUU^ C - G G U U GUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
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Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-105-P1_5p |
mirBase accession | None |
Sequence |
0- UCAAAUGCUGAGACUCCUUGGUG -23
Get sequence
|
Star sequence |
Eca-Mir-105-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
35- CCAUGGAUGUUUGAGCAUGUGCU -58
Get sequence
|