MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-281-P13

Family name MIR-281 (all species)
Seed GUCAUGG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-281a
Paralogues Pma-Mir-281-P12 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dpu-Mir-281  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) P. marinus
Node of Origin (family) Nephrozoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046072.1: 10038706-10038767 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGCCUCCGGCUCGAGCGACUGUCGAGCAGGGGAGCUCCGUCCAUGACGGGGAUUUGUCGUGUGUACUUGUCAUGGAGUUGCUCUCUUGCUCGCCGUUACGCUGCUCUCUCCACGAUUAA
Get precursor sequence
Structure
        10         20          30        40        50        60 
GGAAGCCUCCGGCUCGA-   --| U U             UCCG           GAUUUGU 
                  GCG  AC G CGAGCAGGGGAGC    UCCAUGACGGG       \
                  CGC  UG C GCUCGUUCUCUCG    AGGUACUGUUC       C
AAUUAGCACCUCUCUCGU   AU^ C -             UUG-           AUGUGUG 
120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-281-P13_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGGAGCUCCGUCCAUGACGGG -23
Get sequence
Mature sequence

Pma-Mir-281-P13_3p
mirBase accessionMIMAT0019535
Sequence 
40- UGUCAUGGAGUUGCUCUCUUGC -62
Get sequence