Mir-281

MirGeneDB ID

Csc-Mir-281

Family name

MIR-281 (all species)

Seed

AGAGAGC

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Ava-Mir-281-P24a Ava-Mir-281-P24b Ava-Mir-281-P25a Ava-Mir-281-P25b Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cbr-Mir-281-P4 Cel-Mir-281-P3 Cel-Mir-281-P4 Cin-Mir-281 Cmi-Mir-281-v1 Cmi-Mir-281-v2 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P1-v2 Dan-Mir-281-P2 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P1-v2 Dme-Mir-281-P2-v1 Dme-Mir-281-P2-v2 Dmo-Mir-281-P1-v1 Dmo-Mir-281-P1-v2 Dmo-Mir-281-P2-v1 Dmo-Mir-281-P2-v2 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P1-v2 Dsi-Mir-281-P2-v1 Dsi-Mir-281-P2-v2 Dya-Mir-281-P1-v1 Dya-Mir-281-P1-v2 Dya-Mir-281-P2-v1 Dya-Mir-281-P2-v2 Eba-Mir-281 Ebu-Mir-281 Efe-Mir-281-P5 Efe-Mir-281-P6 Efe-Mir-281-P7 Egr-Mir-281 Esc-Mir-281 Gpa-Mir-281-P1-v1 Gpa-Mir-281-P1-v2 Gpa-Mir-281-P2-v1 Gpa-Mir-281-P2-v2 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lan-Mir-281-P10 Lan-Mir-281-P11 Lgi-Mir-281-P8 Lgi-Mir-281-P9 Lhy-Mir-281 Llo-Mir-281 Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17 Lpo-Mir-281-P18 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pau-Mir-281-P22 Pau-Mir-281-P23 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Pma-Mir-281-P12 Pma-Mir-281-P13 Pve-Mir-281-P19 Pve-Mir-281-P20 Pve-Mir-281-P21a Pve-Mir-281-P21b Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000671375.1_CSC)

NW_019384687.1: 194671-194729 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUUCGAGAAUUCGAGAAGUUAUACUGUUAAGAGAGCUAUCCAUAGACAGUGAAAAAGAUAAUAACUGUCAUGGAGUUGCUCUCUUUAUUGUGUAACUACGUAUCAAUUAUACCUUUG

Get precursor sequence

Structure

        10          20        30        40         50         
AUAUUCGAGAAUUCGAGA--        U  U        UA-|    A      GAAAAA 
                    AGUUAUAC GU AAGAGAGC   UCCAU GACAGU      \
                    UCAAUGUG UA UUCUCUCG   AGGUA CUGUCA      G
GUUUCCAUAUUAACUAUGCA        U  U        UUG^    -      AUAAUA 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Mature sequence

Csc-Mir-281_5p

mirBase accession

None

Sequence

0- AAGAGAGCUAUCCAUAGACAGU -22

Get sequence

Star sequence

Csc-Mir-281_3p*

mirBase accession

None

Sequence

37- UGUCAUGGAGUUGCUCUCUUUA -59

Get sequence