Mir-281-P3

MirGeneDB ID

Cel-Mir-281-P3

Family name

MIR-281 (all species)

Seed

GUCAUGG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-46

Paralogues

Cel-Mir-281-P4

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cin-Mir-281 Csc-Mir-281 Cte-Mir-281 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dpu-Mir-281 Eba-Mir-281 Ebu-Mir-281 Egr-Mir-281 Esc-Mir-281 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lhy-Mir-281 Llo-Mir-281 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Nephrozoa

Genome context
(ce11)

chrIII: 13660529-13660596 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAAGGGUCCAAACUGCUGAGGUGAAGCUGAAGAGAGCCGUCUAUUGACAGUUCAAGACCACGAGUCGUUGUGUGCUGUCAUGGAGUCGCUCUCUUCAGAUGAUCCGGUCAAUGGUAUUUUGUUUUAA

Get precursor sequence

Structure

        10        20          30        40         50        60   
GUAAGGGUCCAAACUGCUGA--  UGAAG           CG-|    U      UCAAGACCAC 
                      GG     CUGAAGAGAGC   UCUAU GACAGU          G
                      CC     GACUUCUCUCG   AGGUA CUGUCG          A
AAUUUUGUUUUAUGGUAACUGG  UAGUA           CUG^    -      UGUGUUGCUG 
      120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-281-P3_5p*

mirBase accession

MIMAT0015096

Sequence

0- AAGAGAGCCGUCUAUUGACAGU -22

Get sequence

Proposed targets

microrna.org: MIMAT0015096

Mature sequence

Cel-Mir-281-P3_3p

mirBase accession

MIMAT0000017

Sequence

46- UGUCAUGGAGUCGCUCUCUUCA -68

Get sequence

Proposed targets

microrna.org: MIMAT0000017
TargetScanWorm: cel-miR-46