Mir-281

MirGeneDB ID

Egr-Mir-281

Family name

MIR-281 (all species)

Seed

AGGAGGG

Species

Hydatid worm (Echinococcus granulosus)

MiRBase ID

egr-mir-281

Paralogues

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Ava-Mir-281-P24a Ava-Mir-281-P24b Ava-Mir-281-P25a Ava-Mir-281-P25b Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cbr-Mir-281-P4 Cel-Mir-281-P3 Cel-Mir-281-P4 Cin-Mir-281 Cmi-Mir-281-v1 Cmi-Mir-281-v2 Csc-Mir-281 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P1-v2 Dan-Mir-281-P2 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P1-v2 Dme-Mir-281-P2-v1 Dme-Mir-281-P2-v2 Dmo-Mir-281-P1-v1 Dmo-Mir-281-P1-v2 Dmo-Mir-281-P2-v1 Dmo-Mir-281-P2-v2 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P1-v2 Dsi-Mir-281-P2-v1 Dsi-Mir-281-P2-v2 Dya-Mir-281-P1-v1 Dya-Mir-281-P1-v2 Dya-Mir-281-P2-v1 Dya-Mir-281-P2-v2 Eba-Mir-281 Ebu-Mir-281 Efe-Mir-281-P5 Efe-Mir-281-P6 Efe-Mir-281-P7 Esc-Mir-281 Gpa-Mir-281-P1-v1 Gpa-Mir-281-P1-v2 Gpa-Mir-281-P2-v1 Gpa-Mir-281-P2-v2 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lan-Mir-281-P10 Lan-Mir-281-P11 Lgi-Mir-281-P8 Lgi-Mir-281-P9 Lhy-Mir-281 Llo-Mir-281 Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17 Lpo-Mir-281-P18 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pau-Mir-281-P22 Pau-Mir-281-P23 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Pma-Mir-281-P12 Pma-Mir-281-P13 Pve-Mir-281-P19 Pve-Mir-281-P20 Pve-Mir-281-P21a Pve-Mir-281-P21b Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)

APAU02000006.1: 1258750-1258809 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGAUUUUGCAAGACUCUCCCUUUGGGGAUAAGGAGGGCCCUUUAUGACCCUUGAGAAAUAAAUCAAUGUCAUGGAGUUGCUCUCUAUAUCCUCAAGGGCUAGGCAUCUUUUUCUCCGUG

Get precursor sequence

Structure

        10          20        30        40         50         
GUGAUUUUGCAAGACUCUC--            A       C-|        CCUUGAGAA 
                     CCUUUGGGGAUA GGAGGGC  CUUUAUGAC         \
                     GGGAACUCCUAU UCUCUCG  GAGGUACUG         A
GUGCCUCUUUUUCUACGGAUC            A       UU^        UAACUAAAU 
.       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

Tissue expression

Er	Er	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Mature sequence

Egr-Mir-281_5p

mirBase accession

MIMAT0041187

Sequence

0- AAGGAGGGCCCUUUAUGACCCUU -23

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Co-mature sequence

Egr-Mir-281_3p

mirBase accession

MIMAT0041188

Sequence

37- UGUCAUGGAGUUGCUCUCUAUAU -60

Get sequence